Install

Installing barroso

The barroso package is available on GitHub and can be installed using devtools. Before installation, make sure you have the following packages installed:

# Install devtools if needed
install.packages("devtools")

# Install dependencies
devtools::install_github("idiv-biodiversity/LCVP")
devtools::install_github("idiv-biodiversity/lcvplants")

# Install barroso
devtools::install_github("DBOSlab/barroso")

Load the package

library(barroso)

You are now ready to start cleaning, standardizing, and analyzing plant specimen records.

System Requirements

R version >= 4.1
Compatible with macOS, Windows, and Linux
Requires internet access to query taxonomic APIs and download specimen records

Optional: Install recommended packages

For full functionality (label generation, mapping, regex, etc.), install the following suggested packages:

install.packages(c(
  "dplyr", "stringr", "sf", "ggplot2", "rmarkdown", "purrr", "tidyr"
))

Get Help

For troubleshooting or support, visit:

---
title: "Install"
format:
  html:
    toc: true
---

<style>
  body {
    position: relative;
  }

  .watermark {
    position: fixed;
    bottom: 50px;
    right: 50px;
    opacity: 0.15;
    z-index: -1;
    width: 300px;
  }
</style>

<img src="/figures/barroso_hex_sticker.png" class="watermark" alt="barroso logo watermark">

## Installing barroso

The `barroso` package is available on GitHub and can be installed using `devtools`. Before installation, make sure you have the following packages installed:

- [`devtools`](https://CRAN.R-project.org/package=devtools)
- [`LCVP`](https://github.com/idiv-biodiversity/LCVP)
- [`lcvplants`](https://github.com/idiv-biodiversity/lcvplants)

```r
# Install devtools if needed
install.packages("devtools")

# Install dependencies
devtools::install_github("idiv-biodiversity/LCVP")
devtools::install_github("idiv-biodiversity/lcvplants")

# Install barroso
devtools::install_github("DBOSlab/barroso")
```

## Load the package

```r
library(barroso)
```

You are now ready to start cleaning, standardizing, and analyzing plant specimen records.

## System Requirements

- R version >= 4.1
- Compatible with macOS, Windows, and Linux
- Requires internet access to query taxonomic APIs and download specimen records

## Optional: Install recommended packages

For full functionality (label generation, mapping, regex, etc.), install the following suggested packages:

```r
install.packages(c(
  "dplyr", "stringr", "sf", "ggplot2", "rmarkdown", "purrr", "tidyr"
))
```

## Get Help

For troubleshooting or support, visit:

- [barroso GitHub repository](https://github.com/DBOSlab/barroso)
- [GitHub Discussions](https://github.com/DBOSlab/barroso/discussions)